Academentia and the iPad: an update from 2010.

iPaddr

Daniel Bogan via Compfight

 

Prompted by a conversation on Twitter yesterday, I revisited my old ‘how I use my iPad in academia’ post and since it’s been about 2.5 years, it seemed time for an update.  So, some quick notes on how I’m using it now:

  • Reading.  I don’t use iAnnotate any more, since Goodreader added annotations and nice Dropbox syncing.  I keep a Dropbox folder with my current ‘to read’ pile of articles and books, which is slurped up to my iPad by Goodreader.  I read articles on the iPad, annotating and highlighting as I go, and then I sync it back to Dropbox.  Back on my Mac, I file the papers away in BibDesk (I haven’t seen a use case for ‘social’ reference managers like Mendeley yet – at least for me – and I’m not sure if I’m going to any time soon).  Other ebooks, including an increasing number of textbooks, are read via the Kindle app and iBooks.  I prefer the iBooks software, to be honest, but right now I read it where I can find it.  Truth be told, I’ve gotten so used to ebooks now that when I can’t find something in digital format it noticeably irritates me.
  • Calendaring:  I sync my Google calendar to my iPad and iPhone, and read my calendar on the iPad with Agenda.  I prefer Agenda for the clean interface, though it’s a minor preference for me.
  • Organisation:  I wrote back in 2010 that Things was moving too slowly for my taste and that I was going to search for alternatives, but I never found one I was comfortable with.  I tried a lot of them:  Today, Remember the Milk, Appigo’s Todo, Wunderlist, and more.  All of them had some sort of problem that turned me off, be it bad syncing or subscription plans for useful services (hell, no) or something else that bugged me enough to make me switch back to Things.  I honestly don’t think that Cultured Code really deserves as much of my money as they’ve gotten, but I keep coming back to them for some reason.  This is a highly individual thing, though, and your mileage is going to vary.  A lot.
  • Social media, of course:  I still prefer the stock Twitter app on the iPad over alternatives so far, though if I do switch it will probably be to Twitterific.  I’ve written blog posts using Blogsy and I use the WordPress app to administer the blog.  I’ve made a few Skype calls with the iPad, which turned out all right (though I prefer wired connections for video calling), and the iPad is really the only way that I check Facebook any more.
  • News:  now that Google Reader is going the way of the dodo, I’ve switched to Feedly and I couldn’t be happier.  For saving stories to read later, I rely on Pocket.
  • Navigation: I’ve found that Apple Maps has gotten much better recently, so I’m no longer unhappy that Google Maps isn’t on the iPad (still not sure why that is, though).  I use maps more on my phone anyways.
  • Note-taking:  This is a category with a lot of change since 2010.  Nowadays I’ve switched largely to Notability for note-taking.  I find its handwriting set up easy to use when I’m jotting down notes in a meeting or a seminar, and it’s intuitive for scribbling on manuscripts and sending them back to colleagues.  I use a stylus for these tasks;  I’ve enjoyed the Pogo Connect, but my wife enjoyed it so much for drawing that she actually stole it from me.   So while I wait for the Adonit Jot Touch to shop (grrr, delayed), I’m using a $10 Dausen stylus that actually works quite well. I’ve also used Noteshelf as a notetaker for its nice writing tools and early integration with the bluetooth styli like the Pogo Connect;  when the Touch comes, I’m not sure exactly what I’ll end up using full time.   And when I’m looking to do more free-form scribbling, or I’m noodling with equations or just sketching something, I like Paper; it’s simple but pretty and powerful enough to get the job done.  I’ve also become more and more reliant on Corkulous to make notes in.  Unfortunately, despite protestations to the contrary, Appigo shows no sign of giving a crap about further development of Corkulous, and I’m reaching the limits of what the app will handle in terms of notes.  Also unfortunately, there doesn’t seem to be a good replacement out there, so I’m considering making one myself.
  • Information collecting:  some people would put apps like Evernote into the notetaking category above, and the Evernote + Penultimate setup works quite well for some people;  I haven’t looked at it in a while, but I may revisit it.  Until I do, though, I’m using Springpad as a dumping ground for random bits of info that I need (travel plans, receipts from conferences, paper work I may need to reference, books I want to buy, etc).
  • Mathematics and programming:  when I feel like playing around with a bit of math or I need to plot a quick graph, I use apps like SpaceTime1, PocketCAS, and Quick Graph.  Programming on the iPad is still a bit of a non-starter, though that’s starting to change a bit.  I’ve had fun playing with Codea, which embeds a Lua interpreter, and if you feel like learning Haskell, there’s iHaskell (must have an internet connection, though).  I recently used Codea to whip up a quick simulation of genetic drift (Fisher-Wright model), and it worked great.  I’ve seen a few Python apps and the like, but I haven’t had any experience with them;  if you had, please leave a comment!
  • Drawing / diagramming / presentation :  Another category with big changes to it.  When I last wrote about academic iPad usage, there wasn’t much to speak of here.  In the intervening time, though, this space has exploded.  Now, I use apps like Procreate (others like Sketchbook Pro) to sketch and draw with the Pogo Connect,  iDraw to create vector diagrams for talks and posters, and Omnigraphsketcher to work up quick hypothetical graphs.  Most of this gets fed into desktop apps like Keynote or Pages (or other design programs);  the iPad versions of these apps are good as well, and I use Keynote regularly to present with, but I’m still hamstrung by the lack of font support in Keynote for iPad.  Another long-awaited and massively useful tool to arrive is LaTeX snippet tools;  on the desktop, I use LaTeXiT pretty regularly, and now apps like Mathbot are serving the same purpose for me on the iPad:  I can write a quick line of LaTeX and copy the typeset equation into another app like Corkulous.
  • Writing: big changes here, too, driven by changes in my desktop workflow.  With my recent shift to using Markdown as a major format for writing, I’m now free to use some of the great cloud-syncing editors for the iPad to start things off.  So, a lot of my papers, blog posts, etc. now start their lives in Byword, which is incidentally the first app to really turn me on to iCloud syncing.  When I have to interact with Microsoft formats – yuck – I use still use Quickoffice.  LaTeX on the iPad has come a ways, with apps like Texpad, but I still find them too clunky for common use.  I’ve also gotten into collaborative writing of LaTeX through web apps like Spandex (and a new one that I’ve been meaning to try, Authorea), so I’m not really fussed about dedicated apps for LaTeX any more.
  • Misc: A few other apps I can’t live without include Dropbox, OPlayer HD for entertainment on the go, Calcbot for quick arithmetic, Convertbot to … well, convert stuff, Photogene / PS Express for quick photo edits (especially to screenshots I take to paste into other apps), and probably a dozen others that I use regularly but can’t remember right at this moment.

Going back to my old post, it’s clear that my usage of the iPad has changed significantly since I last wrote about it.  Some of the frontline, day-to-day apps that I use have changed or clarified (e.g. I use only Goodreader now instead of GR+iAnnotate), and entire new uses for the device have popped up, like drawing and writing in Markdown.  Increasingly, the iPad has become an indispensable part of my daily workflow, and though I could live without it, I certainly don’t want to!

What are your favourite apps and workflows for mobile devices (iOS or otherwise)?  If you have any thoughts, please leave a comment or let me know on Twitter.

  1. which is apparently now called MathStudio?

On the good and evil of scientific stories.

tl;dr: telling a good story is a vital tool in science communication, but it’s easy to go too far for a simple narrative.

If you’ve read this blog, attended a talk that I’ve given, or sat in on one of our lab meetings, you would know that one of my pet issues in science is communication. Scicomm, as it often goes by now, means more than explaining science to the public, though that is of course a large part of it. It’s also about how we communicate our science to other scientists, either in our field or ourside of it. Journal publications, conference talks, seminars, monographs, all of these things – and more – fall under science communication to me. And if you had found yourself as a fly on the wall when I was editing one of the Ph.D. students’ papers or critiquing conference slides, you would almost certainly hear me talk about story.

More precisely, you’d probably hear me say something like “what’s the story?” when I got through a rough draft of a manuscript, or after I watched a practice talk for an upcoming conference. When I say “story”, what I mean is the narrative and plot that ties together the work that you’ve done into a cohesive whole that the audience can follow and emphathise with. In the first chapter of his book Storycraft, Jack Hart cites this definition of story from Jon Franklin:

A story consists of a sequence of actions that occur when a sympathetic character encounters a complicating situation that he confronts and solves.

Story, as Hart says, consists of a recounting of a chronology of events (narrative), and the selection of arrangement of material so that a larger meaning can emerge (plot). Hart says:

For Eudora Welty “Plot is the ‘Why?’” Or, as the novelist E. M. Forster famously put it, the narrative is that “the king died and then the queen died.” The plot is that “the king died and the queen died of grief.”

I raise these issues because this is a problem that I’ve thought about at length when it comes to scientific communication. You might object that communicating science isn’t about a story, a narrative, or a plot, but I would strongly disagree. When you give a talk at a conference, you do exactly as Hart recounts: you construct a narrative and select material to form a plot (‘we identified some limit to our knowledge, we formulated some hypotheses, we did a test, we got some results, OMG science”), even if this looks nothing like what actually happened. You might be more familiar with this process in its rage form. Don’t fool yourself, this is story crafting. In its simplest form the scientist is the protagonist, the complicating situation is the unknown s/he is trying to banish as described in the introduction / methods, and the climax is wrapped up neatly in the results before the gentle falling action and dénouement in the discussion.

Story in formal scientific writing is often limited to the imposition of this narrative and plot structure, though stating it this way belies its importance; if you’ve ever reached the end of a journal paper and thought ‘what the hell was that paper about?’ (and we all have), chances are reasonably good that you’ve just experienced a failure of story. But when science is communicated to a wider audience, story begins to feature even more strongly. Whether written by scientists, science communicators, or journalists, it is easier to see this in action when the masters of the craft are in action. David Quammen, in his book Spillover structures his description of the hunt for Ebola and its reservoir around the story of the medical researchers who have tracked it through the jungles of Africa, winding in and out of their struggle to identify the source of the disease and the effects that it has on the people of Africa and elsewhere. It’s a detective story, which Quammen uses as a hook to lubricate the discussion of everything from molecular biology to mathematical epidemiology. But it’s the story that drives us through what would have otherwise been a textbook on epidemiology.

If I haven’t made it clear by now, I think that story’s important. Yet I also think that story has a dark side, one that we must be ever vigilant about as scientists, and it’s this: the push for a good story can obscure the truth. Science is messy, and full of complications and stumbles. There’s not always an answer, or a happy ending, and sometimes what we thought was right for a long time turned out to be incomplete, or even wrong. This fact is what makes writers like Quammen and science communicators like Carl Zimmer so valuable; they capture that messiness without letting it overwhelm the story, and in so doing make our science interesting to people. But if the push for a story goes too far, it can result in over-simplification and even simple and dangerous untruth.

I was reminded of this when I came across a post by one of my favourite writers on visual design, Garr Reynolds; Garr wrote the book Presentation Zen, and a series of other books like it, and I still recommend them to other scientists as a good way to get a handle on how to make your presentations suck less, visually. Recently, however, Garr wrote a post praising a video containing the work and narration of Paul Zak. The post, entitled “Neurochemistry, empathy & the power of story”, is itself curiously meta, as it disucsses work by Zak on neurochemical responses to the ‘dramatic arc’; in short, Zak claims that oxytocin and cortisol are part of the neurochemical suite that responds directly to the structure of a story, and can even be used in a predictive fashion (here, to predict the amount of donations that will be given when viewing a tearjearker story of father dealing with a young child dying of cancer versus the same father walking in the park with his son).

The irony of this, of course, is that Zak himself is an adept storyteller who has constructed a narrative around oxytocin as the ‘moral molecule’, reducing good and evil to the action of a single neurotransmitter. Here’s an excerpt from a Guardian article1 on Zak from last July:

What drives Zak’s hunger for human blood is his interest in the hormone oxytocin, about which he has become one of the world’s most prominent experts. Long known as a female reproductive hormone – it plays a central role in childbirth and breastfeeding – oxytocin emerges from Zak’s research as something much more all-embracing: the “moral molecule” behind all human virtue, trust, affection and love, “a social glue”, as he puts it, “that keeps society together”. The subtitle of his book, “the new science of what makes us good or evil”, gives a sense of the scale of his ambition, which involves nothing less than explaining whole swaths of philosophical and religious questions by reference to a single chemical in the bloodstream.

Here, we see the danger of story. In constructing a simple story with a compelling and digestible arc, Zak has swept the truth of this research under the rug, and the truth is that research on oxytocin is messy, contradictory, and provides few clear answers. As Ed Yong describes it, oxytocin can have distinctly contrasting effects depending on who receives it; some people may exhibit more social behaviour, while others in the same situation may exhibit more antisocial behaviour under the same dose of oxytocin. It can promote trust, or increase xenophobia. It may be that oxytocin is part of some motivator system: for example, people like James Goodson have worked to show that in birds like the zebra finch it2 is implicated in the ‘social behaviour network’ and may be instrumental in zebra finch flocking, though as in many other animals, this effect can be strongly sex-specific (usually to females).

All of this complication and mess is ignored in Zak’s story, which does a disservice to the reader who comes away with a simple view of the world that just doesn’t hold water. A friend of mine, a lawyer, asked me awhile ago if what he’d heard about this ‘cuddle chemical’ was true, and was visibly disappointed to learn that it was much more complicated than that. The problem here is that we are disposed to like a good, simple story; it has more emotional impact, which in turn makes it easier to remember and explain to others. Certainly, nobody wants to spend as much time reading journal articles and learning about nonapeptide hormones like oxytocin as I did for my PhD exam in order to tell a story at a party. This is why we have people like Ed, and Carl Zimmer, and Maryn McKenna, and all of the other great science communicators, writers, and science / scientist bloggers: they do the hard work of curating the facts and telling the story without losing the truth. Contrast Zak’s writing with Ed’s takedown of the oxytocin mess. It’s just as good a story, but it treats the truth with respect, and the truth is that we’re just not there yet. We have tantalizing ideas and scraps of evidence on how oxytocin affects us, but we can’t draw definitive conclusions. As Ed discusses, the hype around oxytocin has even led to people using it in an attempt to treat autism, with unknown and possibly harmful effects.

This isn’t an isolated problem. The TED talks have become a serious problem in this regard, and though I’ve seen some great TED talks over the years, they’ve grown to the point where the push for good stories has overwhelmed the ability of science to provide them. I saw the most recent example on Boing Boing when Maggie Koerth-Baker pointed to a problem in the widely-circulating story spun by 19-year old Boyan Slat on a plan to remove plastic from the oceans, namely, that it won’t work. Here again, we see the elements of story at work, this time surrounding Slat himself. A 19-year old phenom who rises to glory on the back of an award-winning school research paper, a hands-on problem-solver producing solutions and starting a foundation to implement them. It’s a feel-good story with a likeable protagonist who is tackling a problem that scares us all; it’s a shame that the scheme probably won’t work, and may even do more harm than good if ever implemented. The issue at hand, though, is that the story told by and about Slat is compelling but oversimplistic and potentially dangerous, just as the one told by Zak is3. As Maggie points out in her post:

Here’s a mantra to remember: TED Talks — interesting if true.

And the same is true with anything you read in the popular press about science. It’s interesting, if it’s true.

Now, I began this post by pointing out that I’m a big proponent of story in science, and I stand by that statement. Story is an important, and I would argue, necessary tool when we come to communicate the results of out work, for the same reasons that it can go badly wrong. A carefully crafted story draws the audience through the science, ties it together in a way that they can understand and remember, and adds punch to the work so that the audience cares enough to pay attention. Yet this process, while vital, needs to be kept in check by the demands of the search for the truth and the admission of messy detail and incomplete knowledge. The tension between story, which yearns to be complete, and science, where more research is always needed, must be respected and maintained lest you end up with bone-dry science or a compelling – but misleading – tale.

  1. or as Ed Yong puts it, ‘ad’
  2. under the name of mesotocin
  3. as an aside, I’d like to say that despite the problems inherent in Slat’s plan and how it ended up going viral, I hope that he keeps trying. He sounds like a smart guy, and failure is a great first step on the road to success.

Slides from recent talks…

I put a fair bit of effort into the design of my talks, so I thought that I would share a couple of the recent talks that have kept me busy as a glimpse into my approach to communicating my science. I’ve done this before, and you may have noticed there what you’ll notice here: over the years, my visual style has evolved (ha!) to be quite minimalistic. I prefer to stand in front of my slides and use them as support, so I keep text to an absolute minimum and focus on using images and short bursts of text to provide emphasis, guide attention, and advance a narrative. This isn’t an approach that will be comfortable or appropriate for everyone; it also makes sharing slides like this a little bit of an odd proposition, because there’s ample room for misinterpretation or unanswered questions when I’m not there to actually talk about what’s on the screen (as I feel that it should be – otherwise, why are you there in the first place?). Thus, if you see something that you don’t understand or that looks odd to you, please give me the benefit of the doubt and feel free to ask questions in the comments!

The first is a talk I gave recently at the biology department at Macquarie, where I was invited by my friends Matthew Bulbert and Julia Cooke. I was inspired by the video games of my early youth, and went with an 8-bit theme:

The second is an outreach talk I gave to a general audience at the Sydney Athiests meetup group a little over a week ago on human evolution, arguing that it has happened, is happening, and will continue to happen. I wrote this talk in a hurry, so I got a little lazy with the font selection (2 points if you know where I got the main font combination in the talk from).

Below are the links to any images that I used, either directly or as inspiration, for these talks which I did not create myself or purchase as stock images. I think I got everything, but if you notice anything missing, please let me know and I’ll try to correct it as soon as possible!

Image links for the Macquarie talk:

 

Image links for the human evolution talk

Headline fun, Volume MCCXIV

Following up on a recent observation:

I opened my news aggregator on the iPad (News360) last night.  News360 aggregates news stories in a way that might be familiar to users of Google News:  it finds the main news item and presents a series of links to the same story from different sources.  Thus, if the story is on, say, baby carrots, it would contain links to that story from CNN, the BBC, local news, etc.  So when I clicked on a story  about the opening of a new cancer centre in the UK, the Institute of Cancer Research (ICR), here’s what I got:

And from the less sober side of the news?

The stories all quote a Professor Brian Ashworth from the ICR, but I don’t see any direct quotes from him about sequencing making cancer a chronic disease, as many of these stories claim. I’m not sure where they’re getting that from, but if anyone knows, please leave a comment!.

I won’t rehash the back-and-forth over who’s to blame for headlines like this;  I wouldn’t be surprised if, as is so often the case, it’s a case of the Chinese Whispers game that starts off with the university PR office and ends up with your grandma wearing a tinfoil hat.  But given how routine this sort of thing is, I don’t think it’s a stretch to say that something is still fundamentally broken in how science news is reported and that if we don’t do something about this, people will lose confidence in us as scientists.  We may not be (entirely) responsible for causing the problem, but we’ll pay the price 3.

  1. ‘say scientists’.  Drink!
  2. Is it 5 years or 10?
  3. Which, now that I think about it, basically makes poor science reporting akin to a negative externality;  the papers benefit, while scientists and the public both pay the cost

A Bit of Behavioral Ecology in 2012

Well, 2012 has come and gone, and WordPress sent me a link to one of those fancy year stats reports a few days ago.  So, if you’re voyeuristic enough (and bored enough) to poke through the stats on this blog, have a glance at the 2012 stats!  This blog had about 10,000 views last year, which makes it a baby blog in social media terms.  That’s all right for me, because my goals for the blog have always been modest, but I’m aiming to increase that a little for 2013.  Stick around, we’re only going to go up from here!

Are grad students just lonely?

I was reading a paper today on computational modelling approaches to an interesting information situation known as the ‘standing ovation problem’, by Miller and Page (2004) (free pdf here), when I came across this nugget:

Methodological perspectives can be deeply ingrained. Prior to presenting the SOP to graduate students in economics, we tested it on Cal Tech undergraduates. Though Cal Tech undergraduates are hardly a random sample, we found that their modeling efforts differed in fundamental ways from those of graduate students in economics. The undergraduates assumed that individuals sat next to close friends (or, even went to the lecture with dates). In contrast, very few economic graduate students included the possibility of friends in their models. This difference might be a reflection of the social life of budding economists, but we remind you that the comparison group here is Cal Tech undergraduates. We suspect that the divergence in assumptions is much more due to the emphasis on individual choice that pervades most of modern economic theory, rather than social differences between the two groups of students. (p.9,emphasis mine).

I make no comment, but I invite comparison to the students of other disciplines or the reader’s own experiences.

What would I change? Nothing.

Over at The Molecular Ecologist blog, Jeremy Yoder is organising a blog carnival about “Knowing what I know now”. Essentially, the question at hand is: what would I do differently in the previous stage of my academic career (my Ph.D., for me) to help me in the current one (my postdoc). When I read this, I thought that it would make a great blog post here, but then the question sank into the back of my mind and I struggled to put anything down on the screen. I fought with it for a few days, until I finally realised why.

I wouldn’t change anything about my graduate career. But I would tell myself something.

Two years into my Ph.D., I was living in Montréal while my wife was living in Edmonton, 3500 kilometers away. It certainly wasn’t an easy life: I spent a fair bit of my time on airplanes, returning to Edmonton at least once every month or every two months, and let me tell you that the novelty of both the Edmonton and Montréal airports wears off quickly. It was stressful financially and emotionally; my wife was working two, sometimes three jobs, and I was putting every waking moment into my Ph.D. research to try and get finished. My sleep cycle was so screwed up that I often went to bed when the sun came up and woke up a few hours later to stumble back over to my computer. I put on a fair bit of weight, I was unhealthy, and I was a mess. There were also a few times – I’m told – when my mother-in-law, Dawn, was the only thing keeping my wife from divorcing me. I’ll owe her forever for that.

Which is one of the reasons that the news of her diagnosis with cancer that summer came as such a blow. The day I received the call, I was on a plane back to Edmonton, and we soon learned that the situation was bad: Dawn had a late-stage gallbladder cancer. Treatment options were limited, and we were faced the prospect of caring for her as she died in an extended and unpleasant fashion. My heart broke for my wife, who was as close to her mother as a human being could be; her father had been out of the picture since she was a child, and so the two of them had faced the world together as an unbreakable unit. Being allowed into that small but powerful family was one of the greatest honours of my life, and watching it go through this darkness was one of the greatest pains.

But here’s what I would tell myself.

In his book, Stumbling on Happiness, Daniel Gilbert presents a compelling case that one of the things that trips us up so badly when it comes to happiness is that we’re terrible at predicting it. In his now well-known TED talk, he discusses the phenomenon of the lottery winners and the amputees; measured at the time of the occurrence, people in the former group would predict their happiness to be much higher than that of the latter one year on, but when actually measured a year later, their happiness comes out to be the same. The lesson of this is not to give up striving for situations that make us happy. Rather, the lesson I take from this is that when life hands you a truckload of lemons, rest assured that you’re probably going to enjoy the lemonade more than you think.

Why would I remind myself of this? Because the truth is that the things didn’t get better, at least not right away. I had to watch Dawn die painfully over the next eight months, and I had to hold my wife’s hand while she underwent the most difficult period of her life, utterly powerless to help. I lost one of the most important people in my life, closer to me than my own parents1. After Dawn died, I had to deal with my own grief while helping my wife do the same. And while all of this was going on, I had to push forward with my Ph.D. research.

When it comes to my Ph.D., I was lucky. I was doing theoretical work, so I could be away from my lab without being entirely crippled. Was that optimal? Hell, no. I went to Montréal in the first place to work with a really smart guy, and I spent most of the last half of my Ph.D. talking to him occasionally on Skype. His patience with me went above and beyond the call of duty, and I don’t think I’ll ever be able to fully express how much I appreciate it, nor will he ever really know how much he taught me despite all of this. I also lost time with my lab mates, from whom I could have learned a lot. The research I did probably wasn’t as good as it could have been, and I might still be paying for that today2.

So, barrels and barrels of lemonade. Yet despite all of that, I’m happy now with how it all came out. As Gilbert would say, I’ve synthesised my own happiness, and I wouldn’t change it for anything. It’s made the scientist that I am now, and even if that’s not as good as I could have been, I can live with that. This all drives down to the core of what I would tell myself at that moment, when I was flying home to Edmonton and facing down the prospect of watching someone I loved die, thinking that my life had gone completely off the rails:

Look, this sucks. I’ll grant you that. But insomuch as you can, try to let go of your predictions and worries for the future, because you’re definitely wrong.

——————————————————————–

Okay, I’m lying a little. I would change one thing. In the first summer of my Ph.D., my wife was teaching in Edmonton so she was able to come down to Montréal for the summer holiday. If I had it to do over again, I wouldn’t have signed up for the ISBE conference in New York so that I wouldn’t have found myself leaving my wife in Montréal to go to New York a week after she came from Edmonton to see me. It seemed like such a good idea at the time and it actually had beneficial outcomes for my career, but it was – by far – one of the stupidest things I’ve ever done.

  1. A story for another day, but my adopted parents and I did not have what I would call a close relationship.
  2. Not an excuse for anything, mind you, just a recounting of the facts. I’m happy to take responsibility for the successes and failures of my work.

Kookaburra!

Got a nice picture of this fellow (?) when he landed in our back yard for a bit of a perch on our clothes dryer:

The kookaburra – this picture is most likely of a Laughing Kookaburra, Dacelo novaeguineae) –  is one of the largest members of group of birds known as the kingfishers. It is well-known for its distinctive call that, as the name suggests, sounds like a laugh.  You can read more about the kookaburra, and hear an example of its call, at this nice little write-up I found about them here (scroll down on the right hand side to “Calls” to find the audio).

(The kookaburra has also been the centre of a few controversies, mostly related to a popular children’s song about the bird).

Tagged ,

I guess I’m just not a real man.

If you’re a man, and you really like [insert chosen thing here - I'll use Star Trek for this post], and you’re a fan and you talk to other people about it, and you spend time watching the TV shows whenever you can and you go to conventions and put effort into dressing up to have fun;  well, then, you’re a freak who should die alone.

Photo by Falashad, used under a CC license.

On the other hand, if you’re a man and you really like sports, and you’re a fan and you talk to other people about it, and you spend time watching matches on TV multiple times a week and you go to games wearing the team jersey and you get drunk and act like a jackass and maybe start some stuff on fire when you lose;  well, then, you’re a real man.

Photo by Matt Gibson (www.matt-gibson.org), used under a CC license.

Explaining the stupidity of this is left as an exercise to the reader1.

  1. Despite what it may look like, this isn’t about me.  I just heard about someone who’s a fan of Star Trek get rejected by a woman at the ‘should I contact him?’ stage for solely that reason, and it struck me as stupidly unfair
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Science is a process, not a person.

tl;dr I got into a fight with a creationist during an online science outreach event. Here’s my thoughts on why it should never have happened.

I’ve been a little quiet here since my last post; after I wrote that, I spent most of the rest of August in Europe, and upon my return I participated in an online outreach activity called ‘I’m a Scientist – Get me out of here!’. If you’re not familiar with the contest, it links up science classrooms throughout Australia with scientists like me, with the scientists answering questions posed by students and engaging in chats with classes online. Students vote on their favourite scientist and the participating scientists are progressively voted off the island until one winner remains. The scientists are partitioned into ‘zones’, with five scientists per zone; some zones are themed, like the zone I participated in (‘Disease’), and others are more free-for-all.

(You can read the reflections of the winner of the Boron zone, Simon O’Toole, here.)

Participating in this event was great fun, and even though I was eventually defeated in second place, interacting with the students was more than enough to make it worth my time. I answered a lot of great questions, though some patterns were definitely evident – I may put ‘Zombie Guy’ on my next conference nametag – and even if the chats got hectic at times, they were a great way to interact one-on-one with the students and show them who and what a scientist is1. Yet half way through I ran straight into a issue which caused me serious consternation, and I’d like to reflect on it a bit more here.

The problem began with a deceptively innocuous question by one of the students, ‘How do YOU think life started?‘ I’d already been running into one of my fellow scientists, Soon, in the chats when she would answer questions about evolution with ‘Darwin was wrong’, and ‘We didn’t evolve from monkeys’, and now things really hit the fan. If you’re bored, masochistic, or just interested in seeing 19th century creationism in a 21st century context, go take a gander; I’ll warn you, though, it’s definite tl;dr territory. For brevity’s sake, here’s a condensed, abridged, and mangled version:

Me: Somewhere before 3.5 billion years ago, the first life (replicators) appeared. We don’t know a lot of the details, and there’s a lot of ways it could have happened, but there’s also been a lot of great experiments done to show possible steps in this chain. Lots of cool science to be done here!

Soon: I’m a biochemist, and Stanley Miller didn’t show anything useful about the beginning of life. Also, cells are too complex to evolve. The Big Bang is ridiculous – what caused the Big Bang? 2nd law of themodynamics means life can’t organise itself (ermagherd entropy!!). Also, if you see something that looks designed, it must have a designer (Paley’s zombie watchmaker argument). Thus, Creator!

Me: *picks jaw up off the floor*

What?

I’ll ignore the details of slapping down the half-baked creationism that Soon (and, unfortunately, Natasha) peddled in her answer; you can see the thread for all of the gory details, or, say, any book written since about 1859. The real problem raised by Soon’s answer is that, in my opinion, Soon’s answer should not have been allowed to begin with. Failing that, the organisers should have made clear that Soon’s opinions were not scientific, and did not belong in an educational forum devoted to science. I had a long talk with the organisers (Kristin Alford and James Hutson) about this behind the scenes, and I hasten to add that while I disagree with their position on this, I respect them greatly. They took the position that my responding directly to these questions modelled how scientists think and how we come to the correct conclusions when presented with unscientific and – frankly – just plain wrong statements about science. In their view, the students would learn more from my response to Soon than from my withdrawing from the competition in protest, which is what I had planned to do. (I eventually relented on withdrawing, not because I believe that Kristin and James were right, but because I felt that I needed to do what I could to counterbalance what Soon (and to a lesser extent, Natasha) were saying to the students).

Kristin and James’s position is intuitively pleasing. After all, as scientists we face these sorts of opinions many times, and showing the students how we deal with them could only be a benefit, right? But I still maintain that this was the wrong approach to take, for two reasons: because addressing creationism in an event dedicated to science legitimises it, and because the structure of the event did not easily allow for the real rejoinder to this, which is that science is a process, not a person.

The first reason is the same reason that Dover teachers refused to read a single statement about intelligent design to their classes, and why the school board members who had been overruled on the introduction of creationism to their schools resigned in protest. Creationism is unscientific, and it does not belong in a science classroom – to introduce it not only damages the science, but legitimises the creationists and makes it appear as if there is a debate where there is none. I viewed my participation in I’m a Scientist as I would any outreach activity where I went into a classroom in my role as a scientist; my duty to the students in this situation is to safeguard their education by presenting the science faithfully to the best of my ability. The Dover teachers didn’t accept what they’d been told and ‘model critical thinking’ in response , because this presented a real danger to students’ education (you can ask Kentucky how this turned out for them). And I will not give ground to creationism in a scientific venue or let it seem as though it is a legitimate alternative to evolution or science (including the study of abiogenesis); as Dawkins quotes Robert May as saying, “That would look great on your CV, not so great on mine“.

The second reason is equally important, though it’s possibly less obvious. When I get into a fight with Soon over creationism, I’m not alone; I draw on the work of tens of thousands of scientists and centuries of scrabbling at the walls of ignorance that these men and women have given their lives to. The words that come out of my mouth or from my keyboard are the result of a process with a long history, one which has produced the accumulated mountains of evidence we have that science works and that it gives us true answers about the world. What I say isn’t true because I say it. It’s true because we as scientists (and anyone else who seeks the truth) have proven it. We’ve done it in fits and starts, we’ve debated bitterly, we’ve made mistakes, we’ve corrected them, but we did it together and over a long time. Students viewing a debate between Soon and I may think that the watchmaker argument is a valid attack on evolution; after all, Soon’s a scientist, right? There were five scientists in our Disease zone, and two of them were creationists – that must mean that there’s a real problem with this evolution thing, right? When Soon tells kids in a chat that ‘we didn’t evolve from monkeys’, hey, it’s coming from a scientist so it’s must be true, right2?

The structure of this competition did not allow for the reality, which is that evolution is true. The reality is that abiogenesis is hard to study, and we don’t know a lot about it, but we’ll learn by using science, not religion. The reality is that climate change is real, that the earth is billions of years old, and that we orbit the sun and not the other way around. These things we know to be true because of the process of science: the meticulous accumulation of evidence by many, many scientists. Along the way we argue and bicker, and there’s always more to learn, but there is a universal consensus on these matters of scientific fact (hey, there’s over 1200 guys named Steve who accept the truth of evolution on the basis of the evidence). But the competition only allowed the students to see science as Soon and I – as people – not as the process that it is. To their credit, Kristin and James put out a call and got a few of the I’m A Scientist alumni to show up on the thread and back me up (thanks, guys!), but given that the final result was 3-2 in favour of evolution and scientific ways of thinking, the students could be forgiven for coming away thinking that this is still just down to a few people with differing opinions.

My position here shouldn’t be taken to mean that I don’t value critical thinking, or teaching these skills. But the hard truth is, I’ve spent a good portion of my adult life acquiring the knowledge that I have about evolution and science (and, I’m happy to say, I’ll never be finished learning about it!). To expect grade 7-12 students to ‘critically think’ their way out of this non-debate in the course of a single short event like this is a fantasy, and a dangerous one. I would be happy to explain the evidence for evolution to the students at length, and do my best to prove to them why we know it to be true and to show them all the things that we still don’t know. But I will not bend on this: creationism answers nothing about science and so does not belong in an event engaged in science education. Nor will it ever.

The organisers of I’m a Scientist seem to know that something went wrong here, and I applaud them for3 being willing to reevaluate their policies for the competition going forward. They’ve assured me that they will look at what happened here, take it seriously, and work to fix it in the future. In the end, I’m happy that I participated in the event; I had a great time, made a couple new online friends, and learned a lot myself (it’s amazing what I had to read to answer some of these questions!). Here’s hoping that the next I’m a Scientist competition can show science for what it is: the light shining on the darkness of our ignorance, held by the hands of anyone who values truth and passed ever forward to cast its glow on new mysteries4.

  1. Time to plug one of my favourite ‘dispelling the lab coats’ sites: This is what a scientist looks like.
  2. Well, it is, but that’s another story.
  3. As they told me offline
  4. Even if those hands sometimes slap each other silly along the way!
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